nafyi.

PUBLIC VIEWPOINTS

Anthony Costa

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1 interviews · 3 viewpoints · 3 topics

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open science infrastructure

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open science infrastructure

Open release of viral protein complex structures

NVIDIA joined a coalition including Google DeepMind and EMBL-EBI to openly release predicted 3D structures for protein complexes of over 2,800 viruses via the AlphaFold Database.

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To help improve the odds, NVIDIA has joined a coalition of global research organizations, including Google DeepMind and the European Molecular Biology Laboratory’s European Bioinformatics Institute (EMBL-EBI), to release predicted 3D structures for the protein complexes of more than 2,800 viruses — openly available to any scientist, anywhere, through the AlphaFold Database.

Anthony Costa·

How Open Science Can Help Researchers Prepare for the Next Pandemic

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developer tooling

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developer tooling

Researchers can use the BioNeMo pipeline for their own targets

NVIDIA is openly releasing the GPU-accelerated BioNeMo Structure Prediction Pipeline used to generate the dataset, so researchers can predict 3D structures for their own protein targets.

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NVIDIA is also openly releasing the BioNeMo Structure Prediction Pipeline , the GPU-accelerated workflow used to generate the dataset, so researchers can go from protein sequence to predicted 3D structure for their own targets.

Anthony Costa·

How Open Science Can Help Researchers Prepare for the Next Pandemic

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prediction uncertainty

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prediction uncertainty

Protein-complex predictions are labeled by confidence

Predictions in the open dataset are labeled by confidence and describe what viral complexes may look like and how individual proteins might interact within a viral proteome.

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Predictions in the open dataset are labeled by confidence. The structures show what viral complexes may look like and how individual proteins might interact within a viral proteome.

Anthony Costa·

How Open Science Can Help Researchers Prepare for the Next Pandemic

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Statements by interview date1

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